GENEPOP 4.2 (Raymond and Rousset, 1995) was employed to estimate Potential deviation from
Hardy-Weinberg equilibrium (HWE).
The genotype distribution for each polymorphism was evaluated for
Hardy-Weinberg equilibrium. The strength of the association between MTHFR gene polymorphisms and CHD was evaluated using the I2 test and odds ratios (OR) with 95% confidence intervals (CI).
A I2 test was used to compare the allele frequency and genotype distribution of each variant following
Hardy-Weinberg equilibrium. Unpaired t-test was used to compare between two physical parameters.
If sub-populations are bred as closed flocks in isolation from each other, as is the case in the present study, a deviation from
Hardy-Weinberg equilibrium is an expected consequence.
Number of alleles (Na), effective number of alleles (Ne), observed heterozygosity (Ho), expected heterozygosity (He), and the
Hardy-Weinberg equilibrium test (HW) were calculated for each locus by the GenAlex software version 6.5 (PEAKALL & SMoUSE, 2012).
Statistical analysis:
Hardy-Weinberg equilibrium analyses were performed using
Hardy-Weinberg equilibrium calculator in www.oege.org/software/Hardy-Weinberg (22).
Although for many years the importance of using specific STR for human identification, forensic DNA casework, missing persons, mass disasters, monitoring needle sharing, monitoring transplants, military casualties and so on has been accepted, for detection of their impact for each population, their forensic parameters specially
Hardy-Weinberg equilibrium should be calculated (4).
Both authors suggested that these alleles could explain the deviations from the
Hardy-Weinberg equilibrium at the loci where they are present.
Chi-square test was used to check for deviation of genotype distribution from the
Hardy-Weinberg equilibrium in both groups.
Hardy-Weinberg equilibrium was tested using the chi-square test as well.