phylogram


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phylogram

a tree-like diagram showing the degree of relationship of different TAXA.
References in periodicals archive ?
Neighbour-joining phylogram was reconstructed by MEGA6 from D1/D2 domain sequence of the large subunit (LSU) of rDNA and the internal transcribed spacer (ITS) of the sequence of yeast TISTR 5966 with similar sequences from the GenBank data base.
The phylogram was constructed from nucleotide sequences of the ompA gene.
The burn-in trees sampled prior to convergence (25% of trees from each run; 5000 sampled trees) were discarded, and the subsequent trees sampled independently from the posterior probability distribution were combined to produce phylogram and 50% majority-rule consensus trees.
The phylogram in Figure 5 was constructed by neighbor joining, as implemented in the Geneious Tree Builder tool, Geneious v8.0.5 (Biomatters), using the Tamura-Nei genetic distance model and an alignment of 573 bp.
A phylogram showing the phylogenetic relationship of Bacillus sp.
The phylogram shows that pneumolysin is evolutionary related with intermedilysin and they share a common ancestry.
Maximum likelihood and Bayesian phylogenetic analyses resulted in similar topologies, and we present maximum likelihood results on the Bayesian phylogram (Figs.
The phylogenetic relationships of root rot pathogens were established by multiple alignment of sequences and generating phylogram depicting bootstrap values using NJ plot software based on Single Nucleotide Polymorphisms (SNPs), insertions/deletions (INDELS), and or length diversity in the ITS and 5.8S nuclear rDNA regions.
The DNA sequences were taken from present study or from NCBI databank; Phylogram is based on ND2 gene sequences of Psittaciformes indicating the molecular classification of the Pakistani rose-ringed parakeet parakeets (including those endemic in other provinces of Pakistan) are clearly warranted.
The model is optimized through Bayesian Markov chain Monte Carlo (MCMC) methods without requiring rate autocorrelation or a starting phylogram, and thus provides a better account for phylogenetic uncertainty (Drummond et al., 2006; Rutschmann, 2006).