contig

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con·tig map

a physical map of a chromosome or stretch of DNA constructed from sets of overlapping clones (contigs).

contig

A continuous segment of genetic material on a chromosome.

contig

a contiguous set of overlapping DNA sequences, which assemble to form a defined region of the genome from which they derived. Contig formation is a necessary step in determining the sequence of an entire genome by the CLONE CONTIG SEQUENCING METHOD. See also GENOMICS.

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Table 1 List of taxa analyzed with novel genes and total number of contigs after assembly Taxon Total contig number Metazoa Porifera Kirkpatrickia variolosa (Kirkpatrick, 1907) 100,231 Latrunculia apicalis Ridley & Dendy, 1886 76,210 Ctenophora Coeloplana astericola Mortensen, 1927 222,614 Mnemiopsis leidyi A.

Discovery of Novel Hemocyanin-Like Genes in Metazoans

It should be noted that the quality of the de novo transcriptome assembly is reliant on the user-defined k-mer value characterized as the length parameter defining the sequence overlap between two reads forming a contiguous sequence (referred as a contig) [44,45].

De Novo Assembly and Analysis of the Testes Transcriptome from the Menhaden, Bervoortia tyrannus

Insertions were investigated using all contigs >500 bp generated from de novo assembly of the reads unmapped after reference based assembly.

Genomic analysis of a serotype 5 Streptococcus pneumoniae outbreak in British Columbia, Canada, 2005-2009

Trans-ABySS Contigs ([greater than or equal to] 100 bp) 557,740 Large contigs ([greater than or equal to] 1,000 bp) 49,162 Maximum length (bp) 13,707 Average length (bp) 333.4 N50 (bp) 1,198 Contigs after length filtering ([greater than or equal 156,686 to] 200 bp) Percentage contigs kept after length filtering 28.09% Average contig length after length filtering (bp) 984.2 Contigs (After CD-HIT-EST + CAP3) 105,153 Average length (bp) (After CD-HIT-EST + CAP3) 591.2 Reads mapped to final reference (%) 70.62 TABLE 2.

Molecular pathway and gene responses of the Pacific white shrimp Litopenaeus vannamei to acute low salinity stress

For this clade a single contig was then generated and deposited on NCBI GenBank under accession number JN797618.

Citotoxicidad de actinomicetos asociada a la ascidia Eudistoma vannamei (Millar, 1977), endemica de la costa noreste de Brasil

(23) The final sequence for each strain was obtained using the Contig Assembly Program (CAP) in BioEdit v.5.0.9 (22) and submitted to BLASTn for homology confirmation.

Desmodus rotundus and Artibeus spp. bats might present distinct rabies virus lineages

En la figura 5 se muestran los contig que fueron analizados, asi como la descripcion de la banda a partir de la cual se realizo la clonacion y secuenciacion.

Expresion diferencial durante la interaccion Solanum tuberosum --Phytophthora infestans

Fine genetic mapping and BAC contig development for the citrus tristeza virus resistance gene locus in Poncirus trifoliata (Raf.).

Breeding, genetic and genomic of citrus for disease resistance/Melhoramento, genetica e genomica de citros para resistencia a doencas

Exonic splicing enhancer (ESE) finder (Cold Spring Harbor Laboratory, New York, US) was used to test whether these polymorphisms had the ability to affect or act as an ESE and found polymorphisms around several ESE motifs in the region (range contig position from 21561001 to 21561901).

Two polymorphisms of RCAN1 gene associated with Alzheimer's disease in the Chinese Han population/[TEXT NOT REPRODUCIBLE IN ASCII]

A 4 Mb high resolution BAC contig on bovine chromosome 1q12 and comparative analysis with human chromosome 21q22.

El genoma bovino, metodos y resultados de su analisis

SNP linked to Gene ABCB6(geneID:10058) Via Contig Annotation.

Urinary porphyrin excretion in neurotypical and autistic children

Construction of a 350-kb sequence-ready 11q13 cosmid contig encompassing the markers D11S4933 and D11S546: mapping of 11 genes and 3 tumor-associated translocation breakpoints.

Recent developments in the pathology of renal tumors: morphology and molecular characteristics of select entities