Sequence Similarity

The degree of sequence identity between 2 nucleotide sequences
References in periodicals archive ?
2% nucleotide sequence similarity to PoAstV-3 identified from a survey that evaluated feces samples from pigs (9).
The affiliation of the strains to the nearest phylogenetic neighbor and the percentage of 16S rRNA gene sequence similarities showed that bacterial strains are closely related to one another and exhibit 94 to 99% sequence similarity at the 16S rRNAgene sequence level.
Amino acid pairwise alignment of CP of ToLCNDV, ACMV and TYLCV showed that ToLCNDV shared more sequence similarity with ACMV than TYLCV.
org) and was checked for sequence similarity against Protein Data Bank (PDB) [8] by using Basic Local Alignment Search Tool (BLAST) [9].
Multiple sequence alignment has shown the high sequence similarity of HrHPPK-DHPS translated amino acid sequence with different proteins from number of plant species including tomato, Arabidopsis, soybean and wheat.
5% of sequence similarity with the reference strain as a criterion of specie identification.
Sequence similarity of 97% classify two isolates in the same species.
In the first part of the Webinar you will learn to more effectively use the Entrez text-based search system and the BLAST sequence similarity search tool to find data relevant to cancer research including sequence, variation, gene and expression information.
The sequences were assigned to individual operational taxonomic units (OTUs) based on a sequence similarity of at least 97%.
The observed homology could not be identified by other means because the proteins have diverged to the point where no remnants of sequence similarity are left, yet the tertiary and quaternary organization is the same.
These markers include adenylate cyclase 3 (ADCY3); diacylglycerol kinase, alpha (DGKA); family with sequence similarity 46, member A (FAM46A); immunoglobulin superfamily, member 4 (IGSF4), which also is known as cell adhesion molecule 1 (CADM1); KIAA1539; myristoylated alanine-rich protein kinase C substrate (MARCKS); proteasome activator subunit 1 (PSME1); Ras association and pleckstrin homology domains 1, also known as LPD (RAPH1); and intracellular Toll-like receptor 7 (TLR7).
Interestingly, EBV miRNAs did not share any sequence similarity with cellular miRNAs, which indicated that they were not acquired from the host but rather that evolution had shaped some of the EBV transcripts so that the host miRNA biogenesis machinery could process them.

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