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The Archaea, phyla Crenarchaeota and Euryarchaeota [Internet].
seasons Phylum indoor dog) lower) (a) combined) Proteobacteria 24 14 8 Firmicutes 32 15 6 Actinobacteria 7 5 0 Bacteroidetes 23 6 2 Cyanobacteria 0 3 4 Chloroflexi 0 0 0 Acidobacteria 0 0 1 Fusobacteria 5 2 0 Verrucomicrobia 0 0 0 [Thermi] 1 0 0 TM7 1 0 0 Euryarchaeota (f) 0 0 0 Tenericutes 1 0 0 Gemmatimonadetes 0 0 0 FBP 0 0 0 Armatimonadetes 0 0 0 Crenarchaeota (f) 0 0 0 Planctomycetes 0 0 0 Phylum unassigned 0 0 2 Total 94 45 23 Exposures Animal Crop farming Crop farming farming (vs.
The methanogens belong to a separate domain archaea in the kingdom of Euryarchaeota and are found in a wide range of other anaerobic environments (Liu and Whitman, 2008; Hook et al., 2010).
At the phylum level, the fecal microbiota is mainly constituted of Bacteroidetes and Firmicutes and with smaller amounts of Verrucomicrobia, Euryarchaeota, and Proteobacteria.
In the archaeal library of CMJP, more than 99.9% of the sequence reads were assigned to methanogenic archaea under Euryarchaeota and distributed with sequence abundance of 97.7, 2.2, and 0.04% in the order of Methanosarcinales, Methanobacteriales, and Methanomicrobiales, respectively.
Crenarchaeota and Euryarchaeota are best characterized, and this taxonomic division is strongly supported by comparative genomics (Ishino, Kelman, Kelman, & Ishino, 2013; Sarmiento, Long, Cann, & Whitman, 2014).
Cave ferromanganese deposits contain some archaea groups, which include mesophilic Crenarchaeota and Euryarchaeota, and this group of archaea has been reported in different studies (31,33).
Analysis of two inoculums showed that Euryarchaeota (Methanosarcinales (1%) and Crenarchaeota (Desulfurococcales)) were represented in both inoculums (Figures 1(a) and 1(b)).
Methanosaeta and Methanobacterium were dominant genera among archaeal population, accounting for 65% and 32% of Euryarchaeota's reads in mesophilic digester without recirculation, while, in digester with digestate recirculation, Methanosaeta accounted for 91% of all Euryarchaeota's.
This resulted in a closed genome from an uncultured representative of the marine group II Euryarchaeota. Other studies have been able to recover a large number of putatively complete viral genomes: 208 phage genomes (Mizuno et al., 2013b); 608 ssDNA viruses (Labonte and Suttle, 2013).
The gut microbiota is also dominated by less abundant phyla such as Proteobacteria, Actinobacteria, and Euryarchaeota .
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